{ "_id": "6a10079dacfb0bcc41c7e717", "Package": "ddsPLS", "Type": "Package", "Title": "Data-Driven Sparse Partial Least Squares", "Version": "1.2.1", "Author": "Hadrien Lorenzo", "Maintainer": "Hadrien Lorenzo ", "Description": "A sparse Partial Least Squares implementation which uses\nsoft-threshold estimation of the covariance matrices and\ntherein introduces sparsity. Number of components and\nregularization coefficients are automatically set.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.0", "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev", "Repository": "https://hlorenzo.r-universe.dev", "Date/Publication": "2025-04-08 18:51:16 UTC", "RemoteUrl": "https://github.com/hlorenzo/ddspls", "RemoteRef": "HEAD", "RemoteSha": "9a433fc708efde932358f584f438bafbd80a07b2", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-22 07:30:56 UTC", "User": "root" }, "MD5sum": "e2d07d26c504c442890cdb14ab507926", "_user": "hlorenzo", "_type": "src", "_file": "ddsPLS_1.2.1.tar.gz", "_fileid": "ac19ed8c8f53a83d0179fe5c785cb63e91ba3eb5c4931bd27780aa3c369223bc", "_filesize": 734480, "_sha256": "ac19ed8c8f53a83d0179fe5c785cb63e91ba3eb5c4931bd27780aa3c369223bc", "_created": "2026-05-22T07:30:56.000Z", "_published": "2026-05-22T07:37:01.240Z", "_distro": "noble", "_jobs": [ { "job": 77335979519, "time": 159, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7155195186" }, { "job": 77335979557, "time": 156, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7155194550" }, { "job": 77335979531, "time": 141, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7155190094" }, { "job": 77335979556, "time": 174, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7155200172" }, { "job": 77335979609, "time": 114, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7155181440" }, { "job": 77335979554, "time": 199, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7155207537" }, { "job": 77335979548, "time": 112, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7155181009" }, { "job": 77335979530, "time": 312, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7155243225" }, { "job": 77335426887, "time": 234, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7155144143" }, { "job": 77335979516, "time": 147, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7155191446" }, { "job": 77335979526, "time": 113, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7155180830" }, { "job": 77335979514, "time": 175, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7155200460" }, { "job": 77335979552, "time": 109, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7155179355" } ], "_buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/hlorenzo/ddspls", "_commit": { "id": "9a433fc708efde932358f584f438bafbd80a07b2", "author": "Hadrien LORENZO ", "committer": "GitHub ", "message": "Update README.md", "time": 1744138276 }, "_maintainer": { "name": "Hadrien Lorenzo", "email": "hadrien.lorenzo.2015@gmail.com", "login": "hlorenzo", "description": "Associate Professor in Statistics\nPhD in Biostatistics,\nPostDoc in INRIA-BSO.\nSupelec engineer in applied mathematics", "uuid": 9289148 }, "_registered": true, "_dependencies": [ { "package": "foreach", "role": "Depends" }, { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.0.5", "role": "Imports" }, { "package": "doParallel", "role": "Imports" }, { "package": "shiny", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "MASS", "role": "Suggests" } ], "_owner": "hlorenzo", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "missing-data", "multi-block", "pls", "supervised-learning", "svd", "variable-selection", "cpp" ], "_stars": 0, "_contributors": [ { "user": "hlorenzo", "count": 251, "uuid": 9289148 } ], "_userbio": { "uuid": 9289148, "type": "user", "name": "Hadrien LORENZO", "description": "Associate Professor in Statistics\r\nPhD in Biostatistics,\r\nPostDoc in INRIA-BSO.\r\nSupelec engineer in applied mathematics" }, "_downloads": { "count": 221, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ddsPLS" }, "_devurl": "https://github.com/hlorenzo/ddspls", "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ddsPLS.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/hlorenzo/ddspls", "_realowner": "hlorenzo", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2018-09-19" }, { "version": "1.0.1", "date": "2018-10-12" }, { "version": "1.0.2", "date": "2018-11-06" }, { "version": "1.0.3", "date": "2018-11-09" }, { "version": "1.0.4", "date": "2018-11-29" }, { "version": "1.0.5", "date": "2018-12-05" }, { "version": "1.0.51", "date": "2019-01-03" }, { "version": "1.0.52", "date": "2019-01-03" }, { "version": "1.0.53", "date": "2019-01-08" }, { "version": "1.0.61", "date": "2019-01-21" }, { "version": "1.0.91", "date": "2019-08-28" }, { "version": "1.1.1", "date": "2019-09-26" }, { "version": "1.1.4", "date": "2020-03-02" }, { "version": "1.2.0", "date": "2023-05-15" }, { "version": "1.2.1", "date": "2024-01-30" } ], "_exports": [ "ddsPLS", "ddsPLS_App" ], "_help": [ { "page": "bootstrap_Rcpp", "title": "C++ implementation of the bootstrap operations", "topics": [ "bootstrap_Rcpp" ] }, { "page": "bootstrapWrap", "title": "C++ wrapper for bootstrap function", "topics": [ "bootstrapWrap" ] }, { "page": "ddsPLS", "title": "Data-Driven Sparse Partial Least Squares", "topics": [ "ddsPLS" ] }, { "page": "ddsPLS_App", "title": "Applet to start ddsPLS", "topics": [ "ddsPLS_App" ] }, { "page": "modelddsPLSCpp_Rcpp", "title": "C++ code to build models, internal function", "topics": [ "modelddsPLSCpp_Rcpp" ] }, { "page": "plot.ddsPLS", "title": "Function to plot bootstrap performance results of the ddsPLS algorithm", "topics": [ "plot.ddsPLS" ] }, { "page": "predict.ddsPLS", "title": "Function to predict from ddsPLS objects", "topics": [ "predict.ddsPLS" ] }, { "page": "print.ddsPLS", "title": "Function to sum up bootstrap performance results of the ddsPLS algorithm", "topics": [ "print.ddsPLS" ] }, { "page": "summary.ddsPLS", "title": "Function to sum up bootstrap performance results of the ddsPLS algorithm", "topics": [ "summary.ddsPLS" ] } ], "_readme": "https://github.com/hlorenzo/ddspls/raw/HEAD/README.md", "_rundeps": [ "base64enc", "bslib", "cachem", "cli", "codetools", "commonmark", "digest", "doParallel", "fastmap", "fontawesome", "foreach", "fs", "glue", "htmltools", "httpuv", "iterators", "jquerylib", "jsonlite", "later", "lifecycle", "magrittr", "memoise", "mime", "otel", "promises", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RcppEigen", "rlang", "sass", "shiny", "sourcetools", "withr", "xtable" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "ddsPLS.Rmd", "filename": "ddsPLS.html", "title": "Data-Driven Sparse PLS (ddsPLS)", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Tuning parameters", "Quality descriptors", "Construction and prediction errors", "Bootstrap versions of the $R^2$ and the $Q^2$", "Automatic tunning of the parameters", "Nota bene", "Download and load the package", "A Latent Variable Model", "A high-dimensional structure", "Correlation structure", "A low correlated data-set", "Evaluate the quality of the model", "Compare with \"non selection\" ddsPLS model", "The S3-method plot", "Predicted versus observed values of the response", "The criterion $\\bar{R}{B}^2-\\bar{Q}{B}^2$", "The $\\bar{Q}_{B}^2$ metrics", "The proportion of informational bootstrap models", "Plot of the weights", "Appendix", "A.1 Definition of the \"component-$r$ $\\bar{Q}B^2$\" denoted $\\bar{Q}{B,r}^2$", "A.2 Function to simulate the high-dimensional data sets", "A.3 Definitions of the explained variances...", "A.3.1 Cumulated", "$$\\hat", "A.3.2 Per component", "A.3.3 Per response variable", "A.3.4 Per response variable per component" ], "created": "2018-07-12 15:01:42", "modified": "2024-01-29 06:50:09", "commits": 36 } ], "_score": 3.6989700043360187, "_indexed": true, "_nocasepkg": "ddspls", "_universes": [ "hlorenzo" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.1", "date": "2026-05-22T07:33:36.000Z", "distro": "noble", "arch": "aarch64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "36da1a1fb70bd22ed32a61880617ddf8c77c1df82a41e7026fbc6178df9a9f8f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.7.0", "os": "linux", "version": "1.2.1", "date": "2026-05-22T07:33:38.000Z", "distro": "noble", "arch": "x86_64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "f7249b95a371426ef37644de40c6b4f5a7137593e3256dace76d64e984dcdc94", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.6.0", "os": "linux", "version": "1.2.1", "date": "2026-05-22T07:33:23.000Z", "distro": "noble", "arch": "aarch64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "e3fe99d25952c4122893f0326f601228a8f724c8c525e3fad132d1dbd1f69014", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.6.0", "os": "linux", "version": "1.2.1", "date": "2026-05-22T07:33:51.000Z", "distro": "noble", "arch": "x86_64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "6f2d591c8b55f836ac53f2702d3de7187047d2698e4b9029edc1ee68137ab2ea", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.5.3", "os": "mac", "version": "1.2.1", "date": "2026-05-22T07:32:54.000Z", "arch": "aarch64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "a285fe819bd73b86ba20579bdb30fa5e1c1b899b1c8510cc23eac707b7c02eaf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.5.3", "os": "mac", "version": "1.2.1", "date": "2026-05-22T07:33:38.000Z", "arch": "x86_64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "4c25bc50f2b915e01d9b077c328f14e70eacafcd22de22bdd61b99d12a4db31c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.6.0", "os": "mac", "version": "1.2.1", "date": "2026-05-22T07:32:51.000Z", "arch": "aarch64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "7535fef63d165c54bb0901aa7bcf7b8bcc697a507ffce965b7d2d59693a91808", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.6.0", "os": "mac", "version": "1.2.1", "date": "2026-05-22T07:35:19.000Z", "arch": "x86_64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "185616e4f29779a4068402405c5491a795ce4a94340210b983a9daaa02ef5d1c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.1", "date": "2026-05-22T07:33:50.000Z", "arch": "emscripten", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "90bfc08652239ca416329281dedf4d2e45aee0c7dec4e6bc455ed9473e6215c2", "status": "success", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.7.0", "os": "win", "version": "1.2.1", "date": "2026-05-22T07:32:24.000Z", "arch": "x86_64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "e67b10913f80929312c03735bf68ea095a718a3da3556ec178a94caaaf3524e1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.5.3", "os": "win", "version": "1.2.1", "date": "2026-05-22T07:32:42.000Z", "arch": "x86_64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "584692a57a6d5ea1a6673350f43431e0d76a09fa05448f21a88ccc02fecf0cb7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" }, { "r": "4.6.0", "os": "win", "version": "1.2.1", "date": "2026-05-22T07:32:22.000Z", "arch": "x86_64", "commit": "9a433fc708efde932358f584f438bafbd80a07b2", "fileid": "81dbc9d132440b7ce027153997145e5dd1b6bbef24cd6345ede09c9a35f3bfe6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hlorenzo/actions/runs/26274488628" } ] }